JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RWDD1_chr6_116566504_116602675	0/0	t0015	4654	3	3	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0016	4649	3	0	0	0	0	3	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0017	4654	3	0	2	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0018	4654	3	0	0	3	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0019	4654	3	0	0	3	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0020	4654	2	2	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0021	4654	2	0	0	2	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0022	4654	2	1	1	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0023	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0024	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0025	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0026	4655	1	0	0	1	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0027	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0028	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0029	4654	1	0	1	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0030	4654	1	0	1	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0031	4654	1	0	0	1	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0032	4655	1	0	1	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0033	4654	1	0	0	0	1	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0034	4654	1	0	0	0	1	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0035	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0036	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0037	4655	1	0	0	1	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0038	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0039	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0040	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0041	4654	1	0	0	0	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0042	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0043	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0044	4654	1	1	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD2A_chr6_83188357_83203935	1/0	t0001	2891	264	60	53	108	10	32	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0002	2886	63	1	13	41	3	5	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0003	2891	39	12	7	16	1	3	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0004	2891	19	0	1	13	0	5	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0005	2891	7	7	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0006	2891	6	0	0	6	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0007	2891	4	4	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0008	2891	4	4	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0009	2891	3	0	2	0	0	1	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0010	2875	2	0	0	2	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0011	2891	2	2	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0012	2891	2	2	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0013	2891	2	0	0	2	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0014	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0015	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0016	2886	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0017	2891	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/1	t0018	2891	1	0	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0019	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0020	2891	1	0	1	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935