JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RWDD2A_chr6_83188357_83203935	0/0	t0021	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0022	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0023	2891	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0024	2891	1	0	1	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0025	2891	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0026	2891	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0027	2891	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	t0028	2891	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2B_chr21_28999384_29024349	0/0	t0001	2107	120	25	23	58	4	10	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0002	2107	102	11	26	36	8	21	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/1	t0003	2106	84	28	7	43	1	4	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	1/0	t0004	2106	68	1	18	46	0	2	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0005	2106	12	12	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0006	2107	10	0	0	10	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0007	2106	9	0	3	0	0	6	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0008	2107	5	5	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0009	2107	4	1	1	0	0	2	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0010	2107	3	0	3	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0011	2106	3	3	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0012	2106	2	2	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0013	2107	2	0	0	2	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0014	2107	1	0	0	0	0	1	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0015	2106	1	0	0	1	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0016	2106	1	0	0	0	0	1	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0017	2106	1	0	0	1	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0018	2106	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0019	2106	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0020	2106	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0021	2107	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0022	2107	1	0	1	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0023	2107	1	0	0	1	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0024	2107	1	0	0	0	1	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0025	2107	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0026	2107	1	0	0	0	0	1	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	t0027	2107	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD3_chr1_95229210_95252225	1/1	t0001	377	368	86	67	163	12	38	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	t0002	377	57	1	11	43	2	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	t0003	378	5	3	2	0	0	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD4_chr4_183634635_183664185	1/1	t0001	2035	241	34	52	109	14	30	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0002	2035	81	40	8	28	0	5	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0003	2035	58	11	9	32	2	4	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0004	2035	45	4	1	36	0	4	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0005	2035	25	3	6	15	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0006	2035	3	3	0	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0007	2035	3	2	1	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0008	2035	3	0	1	0	0	2	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0009	2035	2	0	0	2	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0010	2035	2	2	0	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0011	2035	2	0	2	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0012	2035	2	0	1	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185