JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RWDD4_chr4_183634635_183664185	0/0	t0013	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0014	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0015	2035	1	0	1	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0016	2035	1	1	0	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0017	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0018	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0019	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0020	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0021	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0022	2035	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0023	2035	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0024	2035	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	t0025	2035	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RXFP1_chr4_158516882_158658372	1/1	t0001	1413	192	69	41	46	10	24	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	t0002	1410	7	7	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	t0003	1413	5	4	1	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	t0004	1415	4	4	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	t0005	1413	2	0	0	2	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP2_chr13_31734526_31808389	0/1	t0001	1072	176	21	29	98	4	23	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	1/0	t0002	1072	143	57	20	50	2	13	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0003	1072	55	7	9	37	2	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0004	1072	5	5	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0005	1072	3	0	0	3	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0006	1072	2	0	0	0	0	2	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0007	1072	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	t0008	1072	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP3_chr5_33931386_33943918	0/0	t0001	1124	262	27	27	174	4	30	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0002	1123	85	44	9	26	2	4	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/1	t0003	1124	70	9	30	15	4	11	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0004	1124	5	3	2	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0005	1124	5	3	1	0	0	1	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0006	1123	4	4	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0007	1123	2	2	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0008	1124	1	0	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0009	1124	1	0	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0010	1123	1	0	0	1	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0011	1123	1	0	0	1	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0012	1416	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0013	1124	1	0	0	1	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0014	1124	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0015	1124	1	0	0	1	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0016	1124	1	0	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0017	1124	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0018	1123	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	t0019	1124	1	0	0	1	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP4_chr1_155936638_155948087	1/1	t0001	326	311	88	46	129	12	34	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	t0002	326	1	0	0	1	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXRA_chr9_134321455_134445585	0/0	t0001	4145	58	7	17	21	5	8	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/1	t0002	4145	34	1	9	12	0	11	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0003	4145	15	1	9	4	1	0	copy fasta	RXRA	chr9	134321455	134445585