JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RXRA_chr9_134321455_134445585	0/0	t0004	4145	14	13	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0005	4146	12	3	0	6	0	3	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0006	4145	6	0	6	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0007	4144	5	4	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0008	4145	5	5	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0009	4151	5	5	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0010	4145	4	3	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0011	4145	4	4	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0012	4145	4	3	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0013	4145	3	0	1	2	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0014	4145	3	3	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0015	4152	3	3	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0016	4145	3	0	0	3	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0017	4145	2	0	0	2	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0018	4145	2	0	0	2	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0019	4145	2	2	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0020	4157	2	0	2	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0021	4144	2	2	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0022	4152	2	2	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0023	4144	2	2	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0024	4172	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0025	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0026	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0027	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0028	4145	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0029	4146	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0030	4145	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0031	4145	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0032	4145	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0033	4144	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0034	4145	1	0	0	0	1	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0035	4145	1	0	0	0	0	1	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0036	4145	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0037	4145	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0038	4145	1	0	0	0	1	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0039	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0040	4214	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0041	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	1/0	t0042	4149	1	0	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0043	4150	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0044	4144	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0045	4144	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0046	4146	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0047	4146	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0048	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0049	4145	1	0	0	0	0	1	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0050	4145	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0051	4144	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0052	4144	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0053	4145	1	0	0	0	0	1	copy fasta	RXRA	chr9	134321455	134445585