JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RXRA_chr9_134321455_134445585	0/0	t0054	4145	1	0	0	0	0	1	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0055	4148	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0056	4149	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0057	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0058	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0059	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0060	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0061	4146	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0062	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	t0063	4145	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRB_chr6_33188588_33205665	0/0	t0001	1284	172	44	19	92	7	10	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0002	1284	55	32	7	6	2	8	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0003	1285	48	1	13	25	3	6	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0004	1284	38	1	18	11	1	7	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/1	t0005	1284	31	6	11	5	3	5	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0006	1284	13	1	6	1	0	5	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0007	1283	6	1	0	5	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0008	1285	6	1	0	4	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0009	1305	4	4	0	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0010	1281	3	0	0	0	0	3	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0011	1286	3	0	0	2	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0012	1285	2	0	0	1	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0013	1284	2	0	0	2	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0014	1284	1	1	0	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0015	1284	1	0	0	1	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0016	1284	1	0	1	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0017	1284	1	1	0	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0018	1284	1	0	0	0	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0019	1284	1	0	0	1	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0020	1305	1	0	1	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	t0021	1284	1	1	0	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRG_chr1_165395922_165450126	1/0	t0001	575	220	26	44	102	10	37	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0002	576	117	30	16	65	0	6	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0003	575	20	20	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/1	t0004	575	20	4	10	0	4	1	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0005	573	17	0	4	11	0	2	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0006	575	5	5	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0007	576	4	4	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0008	576	2	2	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0009	575	2	2	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0010	576	1	0	0	1	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0011	575	1	1	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0012	574	1	0	0	1	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0013	575	1	1	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	t0014	575	1	1	0	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXYLT1_chr12_63774909_63814562	1/1	t0001	523	265	50	47	130	8	28	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0002	523	85	11	14	51	3	6	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0003	521	8	5	1	1	1	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0004	523	4	2	2	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0005	523	3	3	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562