JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BACH1_chr21_29293922_29351148	0/0	t0021	3404	1	0	0	0	1	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0022	3406	1	0	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0023	3406	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0024	3402	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0025	3402	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0026	3399	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0027	3402	1	0	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0028	3402	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0029	3406	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0030	3406	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0031	3399	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0032	3408	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0033	3407	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0034	3407	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0035	3405	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0036	3407	1	0	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0037	3405	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0038	3405	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0039	3405	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH2_chr6_89921528_90301843	0/0	t0001	6677	6	0	3	3	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0002	6686	5	2	1	0	0	2	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0003	6688	5	3	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0004	6690	5	3	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0005	6684	4	0	2	2	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0006	6677	4	0	1	3	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0007	6671	4	4	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0008	6678	4	0	1	0	0	3	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0009	6687	4	0	0	4	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0010	6684	4	0	0	4	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0011	6678	4	0	1	2	1	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0012	6682	3	0	0	3	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0013	6678	3	0	1	1	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0014	6678	3	1	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0015	6695	2	2	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0016	6684	2	2	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0017	6692	2	2	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0018	6679	2	0	0	1	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0019	6689	2	0	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0020	6686	2	2	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0021	6679	2	0	1	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0022	6690	2	0	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0023	6686	2	0	1	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0024	6681	2	0	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0025	6689	2	1	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/1	t0026	6686	2	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0027	6696	2	0	2	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0028	6684	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0029	6688	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0030	6689	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0031	6682	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843