JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RXYLT1_chr12_63774909_63814562	0/0	t0006	523	2	2	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0007	523	2	2	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0008	523	1	1	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0009	523	1	1	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	t0010	523	1	1	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RYK_chr3_134152133_134255859	0/1	t0001	1223	218	34	34	121	8	20	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0002	1223	81	12	13	40	1	15	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	1/0	t0003	1226	41	24	10	2	3	1	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0004	1223	21	11	4	6	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0005	1226	4	2	2	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0006	1223	3	2	1	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0007	1223	3	3	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0008	1223	2	2	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0009	1223	2	0	0	2	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	t0010	1183	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYR1_chr19_38428691_38592564	1/1	t0001	284	197	47	50	63	2	33	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	t0002	284	16	14	0	1	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	t0003	284	4	0	0	4	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	t0004	260	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR2_chr1_237037184_237838988	0/0	t0001	1681	14	3	7	2	1	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0002	1681	13	1	7	1	1	3	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0003	1680	10	2	5	1	0	2	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0004	1684	10	5	1	3	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0005	1686	4	0	4	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0006	1681	4	2	2	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0007	1683	3	2	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0008	1679	3	0	1	2	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0009	1681	2	1	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0010	1679	2	2	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0011	1683	2	1	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0012	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0013	1683	1	0	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0014	1683	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0015	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0016	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0017	1684	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0018	1680	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0019	1680	1	0	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0020	1680	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0021	1680	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0022	1680	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0023	1680	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0024	1683	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0025	1683	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0026	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0027	1683	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0028	1680	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0029	1681	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0030	1683	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0031	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988