JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RYR2_chr1_237037184_237838988	0/0	t0032	1683	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0033	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0034	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0035	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0036	1680	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0037	1685	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0038	1683	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0039	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0040	1685	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0041	1680	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0042	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0043	1683	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	t0044	1684	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR3_chr15_33305967_33871102	0/1	t0001	952	64	25	11	20	2	5	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0002	952	32	24	1	7	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	1/0	t0003	956	29	17	4	2	1	4	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0004	956	7	6	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0005	964	5	1	0	3	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0006	952	4	0	3	0	1	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0007	964	3	0	0	3	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0008	956	3	2	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0009	952	2	0	2	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0010	960	2	1	0	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0011	952	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0012	956	1	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	t0013	956	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
S100A10_chr1_151977915_151998859	1/1	t0001	378	374	83	66	167	14	42	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	t0002	378	6	6	0	0	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	t0003	387	5	0	3	0	2	0	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	t0004	378	3	2	0	1	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	t0005	378	1	1	0	0	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	t0006	378	1	0	1	0	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A11_chr1_152027506_152042004	1/1	t0001	246	354	82	70	138	16	46	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	t0002	246	7	7	0	0	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	t0003	246	1	1	0	0	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A12_chr1_153368711_153380621	1/1	t0001	207	326	76	72	138	10	28	copy fasta	S100A12	chr1	153368711	153380621
S100A12_chr1_153368711_153380621	0/0	t0002	207	40	12	8	14	2	4	copy fasta	S100A12	chr1	153368711	153380621
S100A13_chr1_153613799_153632505	1/1	t0001	181	371	95	66	148	14	46	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	t0002	181	2	0	0	0	0	2	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	t0003	181	1	1	0	0	0	0	copy fasta	S100A13	chr1	153613799	153632505
S100A14_chr1_153609255_153621325	0/0	t0001	740	173	10	43	99	7	14	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/1	t0002	740	136	21	22	63	6	23	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0003	740	76	58	5	1	1	11	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0004	740	3	3	0	0	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0005	740	2	2	0	0	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0006	740	1	0	0	1	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0007	740	1	0	0	1	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	0/0	t0008	740	1	0	0	1	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A14_chr1_153609255_153621325	1/0	t0009	740	1	0	0	0	0	0	copy fasta	S100A14	chr1	153609255	153621325
S100A16_chr1_153601886_153618137	1/1	t0001	861	210	79	36	55	7	31	copy fasta	S100A16	chr1	153601886	153618137