JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S100A16_chr1_153601886_153618137	0/0	t0002	861	167	6	36	105	5	15	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0003	867	8	0	0	8	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0004	860	5	5	0	0	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0005	855	4	4	0	0	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0006	858	2	0	0	2	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0007	861	1	0	0	0	0	1	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0008	858	1	1	0	0	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0009	861	1	1	0	0	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	t0010	846	1	0	0	0	0	1	copy fasta	S100A16	chr1	153601886	153618137
S100A1_chr1_153623434_153637039	0/0	t0001	275	229	51	50	90	9	29	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	1/1	t0002	275	143	39	18	64	5	15	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	t0003	275	5	3	2	0	0	0	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	t0004	275	1	1	0	0	0	0	copy fasta	S100A1	chr1	153623434	153637039
S100A2_chr1_153556108_153570844	1/1	t0001	681	284	36	65	123	14	44	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0002	681	53	46	2	2	0	3	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0003	666	24	0	10	14	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0004	681	5	4	1	0	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0005	681	1	0	0	0	0	1	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0006	668	1	0	0	1	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0007	681	1	1	0	0	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	t0008	681	1	1	0	0	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A3_chr1_153542329_153554258	1/1	t0001	437	246	54	55	88	16	31	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	t0002	437	48	37	4	2	0	5	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	t0003	437	8	0	1	5	0	2	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	t0004	437	2	2	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	t0005	437	1	0	0	1	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	t0006	437	1	1	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A4_chr1_153538621_153550806	1/1	t0001	208	331	79	69	131	16	34	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	t0002	207	12	11	1	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	t0003	208	3	3	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	t0004	208	2	0	0	0	0	2	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	t0005	208	1	0	0	1	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	t0006	208	1	1	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A5_chr1_153532147_153545934	1/1	t0001	478	354	76	69	151	18	38	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0002	478	19	18	1	0	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0003	478	1	0	0	1	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0004	478	1	0	0	1	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0005	478	1	0	0	1	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0006	478	1	0	0	1	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	t0007	478	1	0	0	1	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A6_chr1_153529599_153540991	1/1	t0001	162	368	84	65	165	12	40	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	t0002	162	11	10	1	0	0	0	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	t0003	162	1	0	0	1	0	0	copy fasta	S100A6	chr1	153529599	153540991
S100A7A_chr1_153411520_153428222	1/1	t0001	3975	282	29	63	141	8	39	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0002	3975	29	2	3	22	1	1	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0003	3975	28	14	8	5	0	1	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0004	3975	18	15	1	1	0	1	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0005	3975	7	7	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0006	3975	6	0	0	6	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0007	3975	5	5	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222