JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S100A7A_chr1_153411520_153428222	0/0	t0008	3975	4	4	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0009	3975	4	4	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0010	3975	3	3	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0011	3975	3	0	0	3	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0012	3975	3	0	0	3	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0013	3975	2	2	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0014	3975	2	2	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0015	3975	2	0	2	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0016	3975	2	2	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0017	3975	2	0	2	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0018	3975	2	1	1	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0019	3975	2	0	0	0	0	2	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0020	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0021	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0022	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0023	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0024	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0025	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0026	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0027	3975	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0028	3975	1	0	1	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0029	3975	1	0	0	0	1	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0030	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0031	3975	1	0	1	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0032	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0033	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0034	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	t0035	3975	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7_chr1_153452744_153465651	1/1	t0001	124	284	90	54	105	10	23	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	t0002	123	133	4	24	89	4	12	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	t0003	123	2	0	0	2	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	t0004	124	1	0	0	0	0	1	copy fasta	S100A7	chr1	153452744	153465651
S100A8_chr1_153385032_153396073	1/1	t0001	127	321	88	69	110	14	38	copy fasta	S100A8	chr1	153385032	153396073
S100A8_chr1_153385032_153396073	0/0	t0002	127	1	0	1	0	0	0	copy fasta	S100A8	chr1	153385032	153396073
S100A9_chr1_153352854_153366023	1/1	t0001	229	436	92	83	193	18	48	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0002	229	11	0	0	11	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0003	229	8	0	0	8	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0004	229	3	3	0	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0005	208	2	2	0	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0006	229	1	0	1	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	t0007	229	1	1	0	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100B_chr21_46593604_46610082	1/1	t0001	830	304	58	64	133	16	31	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0002	830	106	19	8	70	1	8	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0003	830	18	15	1	0	0	2	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0004	830	7	0	0	6	0	1	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0005	830	7	0	5	0	1	1	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0006	830	5	0	0	0	0	5	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0007	830	4	2	2	0	0	0	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	0/0	t0008	830	1	0	0	1	0	0	copy fasta	S100B	chr21	46593604	46610082
S100G_chrX_16645158_16659670	1/1	t0001	216	290	76	57	117	10	28	copy fasta	S100G	chrX	16645158	16659670