JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S100G_chrX_16645158_16659670	0/0	t0002	216	47	0	7	36	1	3	copy fasta	S100G	chrX	16645158	16659670
S100G_chrX_16645158_16659670	0/0	t0003	216	5	0	0	4	0	1	copy fasta	S100G	chrX	16645158	16659670
S100G_chrX_16645158_16659670	0/0	t0004	216	4	4	0	0	0	0	copy fasta	S100G	chrX	16645158	16659670
S100G_chrX_16645158_16659670	0/0	t0005	216	1	0	0	1	0	0	copy fasta	S100G	chrX	16645158	16659670
S100G_chrX_16645158_16659670	0/0	t0006	216	1	0	0	1	0	0	copy fasta	S100G	chrX	16645158	16659670
S100PBP_chr1_32812653_32863875	0/0	t0001	2993	167	36	38	59	9	25	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0002	2995	49	0	4	38	3	4	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	1/0	t0003	2994	48	30	12	0	1	4	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0004	2993	17	0	4	9	0	4	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0005	2993	8	0	0	8	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0006	2995	8	0	3	0	1	4	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0007	2993	5	0	0	5	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0008	2994	5	5	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/1	t0009	2993	5	2	1	0	1	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0010	2994	4	3	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0011	2994	3	3	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0012	2994	3	1	0	2	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0013	2993	2	0	0	2	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0014	2993	1	0	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0015	2995	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0016	2993	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0017	2993	1	0	0	0	1	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0018	2995	1	0	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0019	2993	1	0	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0020	2994	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0021	2993	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0022	2993	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0023	2993	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0024	2993	1	0	0	0	0	1	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0025	2976	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0026	2993	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0027	2995	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0028	2994	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	t0029	2994	1	1	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100P_chr4_6688878_6702170	1/1	t0001	184	481	100	86	225	18	50	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	0/0	t0002	184	1	0	0	1	0	0	copy fasta	S100P	chr4	6688878	6702170
S100Z_chr5_76845014_76926650	0/0	t0001	1254	122	22	27	55	5	13	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/1	t0002	1254	87	3	18	44	5	16	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	1/0	t0003	1254	62	26	12	12	2	9	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0004	1254	25	4	0	20	0	1	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0005	1254	9	8	1	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0006	1254	9	7	2	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0007	1254	5	5	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0008	1254	4	3	1	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0009	1254	4	4	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0010	1254	3	1	2	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0011	1254	3	2	1	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0012	1254	3	0	0	3	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0013	1254	2	0	0	0	0	2	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0014	1254	2	2	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650