JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S100Z_chr5_76845014_76926650	0/0	t0015	1254	2	2	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0016	1254	1	1	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0017	1254	1	1	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0018	1254	1	1	0	0	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0019	1254	1	0	0	0	0	1	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0020	1254	1	0	0	1	0	0	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	t0021	1254	1	0	0	1	0	0	copy fasta	S100Z	chr5	76845014	76926650
S1PR1_chr1_101232019_101246518	1/1	t0001	1630	277	54	49	128	9	35	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0002	1630	55	2	16	22	6	9	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0003	1630	41	6	3	32	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0004	1630	21	7	0	7	2	5	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0005	1630	20	1	2	17	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0006	1631	19	18	1	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0007	1630	8	0	1	6	1	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0008	1630	5	0	0	5	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0009	1630	2	2	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0010	1630	1	0	0	0	0	1	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0011	1630	1	0	0	1	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0012	1630	1	0	0	1	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0013	1630	1	0	0	1	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0014	1630	1	1	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0015	1630	1	1	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0016	1630	1	1	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	t0017	1630	1	1	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR2_chr19_10216433_10236331	0/0	t0001	2565	79	4	19	48	3	5	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0002	2583	45	7	3	32	0	3	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0003	2571	44	3	16	16	2	7	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	1/0	t0004	2582	38	7	10	15	2	3	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0005	2571	36	3	10	17	4	2	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0006	2572	17	0	5	7	0	5	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0007	2569	12	12	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0008	2584	10	1	0	8	0	1	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/1	t0009	2572	9	0	3	1	2	2	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0010	2566	8	2	1	2	0	3	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0011	2585	8	5	0	3	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0012	2574	6	0	0	6	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0013	2586	5	1	1	3	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0014	2566	5	0	1	4	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0015	2570	4	1	0	0	0	3	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0016	2570	4	4	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0017	2571	4	4	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0018	2573	4	2	2	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0019	2575	4	0	0	4	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0020	2583	3	3	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0021	2583	3	3	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0022	2571	2	2	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0023	2568	2	2	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0024	2570	2	2	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0025	2573	2	2	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0026	2584	2	0	2	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331