JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S1PR2_chr19_10216433_10236331	0/0	t0027	2583	2	2	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0028	2585	2	0	0	2	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0029	2584	2	0	0	2	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0030	2571	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0031	2564	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0032	2565	1	0	0	0	1	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0033	2571	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0034	2571	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0035	2571	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0036	2571	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0037	2572	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0038	2572	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0039	2572	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0040	2573	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0041	2573	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0042	2575	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0043	2575	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0044	2575	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0045	2576	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0046	2583	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0047	2584	1	0	0	0	0	1	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0048	2584	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0049	2585	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0050	2570	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0051	2570	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0052	2572	1	0	0	0	0	1	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0053	2572	1	0	1	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0054	2574	1	0	1	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0055	2576	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0056	2586	1	0	1	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0057	2587	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0058	2582	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0059	2567	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0060	2571	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0061	2567	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0062	2570	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0063	2585	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0064	2586	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	t0065	2571	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR3_chr9_88986468_89010155	1/0	t0001	3194	185	8	35	110	4	27	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0002	3194	58	19	13	18	2	6	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/1	t0003	3194	34	8	1	22	1	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0004	3194	29	1	13	4	5	6	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0005	3194	26	22	3	0	0	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0006	3194	9	7	2	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0007	3194	8	8	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0008	3194	6	1	5	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0009	3193	4	4	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0010	3194	4	4	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0011	3194	4	2	0	0	1	1	copy fasta	S1PR3	chr9	88986468	89010155