JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
S1PR3_chr9_88986468_89010155	0/0	t0012	3194	3	0	3	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0013	3193	3	3	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0014	3200	3	3	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0015	3194	3	0	3	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0016	3193	3	0	0	0	3	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0017	3194	2	0	0	2	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0018	3194	2	0	0	0	0	2	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0019	3194	2	0	2	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0020	3194	1	0	0	0	0	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0021	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0022	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0023	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0024	3194	1	0	0	0	0	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0025	3194	1	0	0	0	0	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0026	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0027	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0028	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0029	3194	1	0	1	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0030	3194	1	0	1	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0031	3193	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0032	3194	1	0	0	0	0	1	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	t0033	3194	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR4_chr19_3173769_3185332	1/1	t0001	410	404	86	76	179	16	45	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	t0002	410	9	9	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	t0003	410	3	0	0	3	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	t0004	410	1	1	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	t0005	410	1	0	0	0	0	1	copy fasta	S1PR4	chr19	3173769	3185332
S1PR5_chr19_10507742_10522447	0/1	t0001	1149	204	44	44	99	5	11	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0002	1150	75	1	18	34	9	13	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0003	1147	70	1	2	55	1	11	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0004	1146	26	12	4	3	0	7	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0005	1150	24	21	0	1	2	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	1/0	t0006	1142	20	11	6	0	1	1	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0007	1151	8	0	0	8	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0008	1142	5	0	0	5	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0009	1141	5	4	1	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0010	1139	2	0	0	1	0	1	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0011	1149	1	0	0	0	0	1	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0012	1149	1	1	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0013	1162	1	1	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0014	1142	1	0	0	1	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0015	1150	1	0	1	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0016	1138	1	0	0	0	0	1	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	t0017	1149	1	0	0	1	0	0	copy fasta	S1PR5	chr19	10507742	10522447
SAA1_chr11_18261264_18274967	1/1	t0001	150	438	97	81	202	18	38	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	t0002	150	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	t0003	150	1	0	1	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	t0004	150	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	t0005	150	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA2_chr11_18240240_18253668	1/1	t0001	208	474	98	86	224	18	46	copy fasta	SAA2	chr11	18240240	18253668