Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BACH2_chr6_89921528_90301843	0/0	t0032	6690	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0033	6681	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0034	6671	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0035	6679	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0036	6684	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0037	6693	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0038	6682	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0039	6678	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0040	6677	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0041	6690	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0042	6684	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0043	6690	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0044	6684	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0045	6678	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0046	6684	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0047	6680	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0048	6676	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0049	6685	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0050	6686	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0051	6690	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0052	6685	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0053	6673	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0054	6696	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0055	6696	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0056	6698	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0057	6688	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0058	6683	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0059	6687	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0060	6684	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0061	6690	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0062	6689	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0063	6692	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0064	6692	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0065	6685	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0066	6693	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0067	6670	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0068	6692	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0069	6674	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0070	6676	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0071	6689	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0072	6672	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0073	6686	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0074	6686	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0075	6685	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0076	6689	1	0	0	0	1	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0077	6684	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0078	6686	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0079	6694	1	0	0	0	1	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0080	6694	1	0	0	1	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0081	6686	1	0	0	0	0	1	copy fasta	BACH2	chr6	89921528	90301843