JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAGSIN1_chr7_6324411_6353967	0/0	t0024	2014	1	0	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0025	2014	1	0	0	0	0	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0026	2014	1	0	0	0	0	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0027	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0028	2014	1	0	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0029	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0030	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0031	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0032	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0033	2014	1	0	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0034	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0035	2014	1	0	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0036	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0037	1968	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0038	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0039	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0040	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAG_chr2_233302816_233352055	1/0	t0001	379	346	90	62	153	12	28	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/1	t0002	379	10	0	6	3	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	t0003	379	7	0	2	4	0	1	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	t0004	379	2	0	0	1	0	1	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	t0005	379	1	0	0	1	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	t0006	379	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	t0007	379	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SALL1_chr16_51130982_51156270	1/0	t0001	1160	185	88	27	56	5	8	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/1	t0002	1159	171	7	44	90	7	22	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0003	1160	8	0	0	8	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0004	1159	4	0	3	0	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0005	1160	2	0	0	0	0	2	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0006	1160	1	0	0	0	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0007	1159	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0008	1160	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	t0009	1160	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL2_chr14_21516080_21531346	1/0	t0001	1844	124	15	35	49	4	20	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0002	1842	68	22	7	33	1	5	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0003	1842	38	7	8	19	1	3	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0004	1827	31	0	1	24	1	5	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0005	1842	29	4	2	21	1	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/1	t0006	1844	27	3	2	9	6	6	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0007	1827	17	0	0	16	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0008	1842	14	14	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0009	1842	14	1	1	8	3	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0010	1842	12	2	3	7	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0011	1844	10	7	0	2	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0012	1844	9	1	5	1	0	2	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0013	1827	8	0	6	0	1	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0014	1827	7	0	0	7	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0015	1842	7	6	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0016	1844	6	1	0	5	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0017	1827	5	0	0	5	0	0	copy fasta	SALL2	chr14	21516080	21531346