JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SALL2_chr14_21516080_21531346	0/0	t0018	1827	4	1	0	3	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0019	1842	4	0	0	4	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0020	1842	3	2	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0021	1842	3	3	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0022	1829	2	0	0	1	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0023	1844	2	0	2	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0024	1842	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0025	1842	2	0	0	2	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0026	1842	1	0	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0027	1842	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0028	1842	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0029	1844	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0030	1842	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0031	1827	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0032	1842	1	0	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0033	1842	1	0	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0034	1844	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0035	1842	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0036	1842	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0037	1842	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0038	1844	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0039	1844	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0040	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0041	1842	1	0	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0042	1842	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0043	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0044	1827	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0045	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0046	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0047	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0048	1844	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	t0049	1844	1	0	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL3_chr18_78974818_79003969	0/0	t0001	2102	87	12	16	42	1	16	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0002	2102	71	13	19	25	8	6	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0003	2104	33	11	4	15	0	3	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0004	2102	17	0	1	16	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0005	2105	11	10	0	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/1	t0006	2104	10	1	1	0	2	5	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0007	2105	10	9	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0008	2104	9	4	1	0	1	3	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0009	2101	8	1	1	5	1	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0010	2101	8	1	4	1	1	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0011	2103	7	4	1	2	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0012	2105	7	6	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0013	2102	6	0	4	0	2	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0014	2103	4	4	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0015	2104	3	3	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0016	2106	3	2	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0017	2103	2	2	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0018	2105	2	1	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969