JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SALL3_chr18_78974818_79003969	0/0	t0019	2105	2	2	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0020	2101	1	0	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0021	2105	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0022	2104	1	0	0	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0023	2104	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0024	2103	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0025	2102	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0026	2102	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0027	2105	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0028	2105	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0029	2102	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0030	2104	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0031	2105	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0032	2104	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0033	2107	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	t0034	2106	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL4_chr20_51777331_51807521	0/1	t0001	2048	108	18	20	50	7	12	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	1/0	t0002	2048	60	4	17	28	3	7	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0003	2051	58	11	5	39	1	2	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0004	2055	14	0	1	10	1	2	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0005	2052	12	7	3	0	1	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0006	2047	10	2	3	4	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0007	2048	10	0	3	0	2	5	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0008	2049	9	2	2	5	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0009	2048	7	7	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0010	2053	7	6	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0011	2047	6	2	0	4	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0012	2053	5	5	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0013	2050	4	4	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0014	2052	4	1	0	3	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0015	2049	4	0	3	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0016	2048	4	0	4	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0017	2053	3	0	0	0	0	3	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0018	2048	3	0	1	1	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0019	2052	3	1	2	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0020	2053	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0021	2049	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0022	2055	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0023	2047	2	0	0	2	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0024	2051	2	0	1	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0025	2048	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0026	2048	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0027	2050	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0028	2053	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0029	2049	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0030	2051	2	0	2	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0031	2047	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0032	2048	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0033	2050	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0034	2046	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521