JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SALL4_chr20_51777331_51807521	0/0	t0035	2047	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0036	2048	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0037	2047	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0038	2049	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0039	2050	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0040	2054	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0041	2056	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0042	2048	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0043	2049	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0044	2048	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0045	2053	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0046	2048	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0047	2049	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0048	2048	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0049	2049	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0050	2048	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0051	2048	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0052	2047	1	0	0	0	1	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0053	2049	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0054	2049	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0055	2049	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0056	2051	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0057	2050	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0058	2054	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0059	2054	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0060	2048	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	t0061	2048	1	0	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SAMD10_chr20_63969116_63984642	1/0	t0001	1570	201	31	35	104	13	17	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/1	t0002	1572	56	19	18	4	2	12	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0003	1572	44	15	14	4	2	9	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0004	1572	10	10	0	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0005	1572	6	0	0	0	0	6	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0006	1572	6	6	0	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0007	1572	5	4	1	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0008	1570	3	0	3	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0009	1572	2	0	0	0	1	1	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0010	1570	2	0	0	2	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0011	1572	1	1	0	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0012	1572	1	0	1	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0013	1570	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0014	1570	1	0	0	0	0	1	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0015	1570	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0016	1570	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	t0017	1570	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD11_chr1_918923_949574	0/0	t0001	931	155	21	34	61	14	25	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0002	931	77	20	2	50	0	5	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/1	t0003	931	66	3	26	19	4	13	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0004	925	46	3	8	35	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0005	931	15	0	5	9	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0006	931	9	9	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574