JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD11_chr1_918923_949574	0/0	t0007	931	9	6	3	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0008	931	8	8	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	1/0	t0009	931	6	3	0	1	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0010	931	6	0	0	6	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0011	931	4	3	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0012	931	4	3	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0013	931	3	2	0	0	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0014	925	3	1	0	1	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0015	931	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0016	931	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0017	931	2	1	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0018	931	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0019	931	1	0	0	0	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0020	925	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0021	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0022	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0023	931	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0024	925	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0025	931	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0026	931	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0027	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0028	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0029	931	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0030	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0031	931	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0032	931	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	t0033	931	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD12_chr8_118372984_118626963	1/1	t0001	1581	62	7	5	32	0	16	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0002	1581	55	26	11	12	0	6	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0003	1581	29	15	6	5	0	3	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0004	1581	11	8	2	0	0	1	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0005	1581	7	0	4	0	0	3	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0006	1581	5	5	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0007	1581	4	4	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0008	1581	2	2	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0009	1581	2	0	0	0	0	2	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0010	1581	1	0	0	0	0	1	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0011	1581	1	0	0	0	0	1	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0012	1581	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0013	1581	1	0	0	1	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0014	1581	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0015	1581	1	0	1	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0016	1581	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0017	1581	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0018	1581	1	0	0	0	0	1	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0019	1581	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	t0020	1581	1	0	1	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD13_chr1_84296708_84355798	0/1	t0001	1151	288	75	59	118	11	24	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	t0002	1153	12	0	1	0	3	8	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	t0003	1151	4	0	0	4	0	0	copy fasta	SAMD13	chr1	84296708	84355798