JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD13_chr1_84296708_84355798	0/0	t0004	1151	4	4	0	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	1/0	t0005	1151	3	1	1	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	t0006	1153	2	2	0	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	t0007	1151	2	0	2	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	t0008	1151	1	0	1	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD14_chr17_50105040_50135160	0/0	t0001	3516	61	3	12	36	1	9	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0002	3510	57	0	7	47	0	3	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0003	3510	51	12	6	33	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/1	t0004	3514	30	13	11	0	2	3	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0005	3510	25	0	0	19	0	6	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0006	3510	22	6	10	1	2	3	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0007	3510	20	3	4	1	2	10	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	1/0	t0008	3510	15	9	3	0	2	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0009	3510	14	1	12	0	0	1	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0010	3510	14	6	2	4	0	2	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0011	3510	8	0	1	7	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0012	3510	8	0	6	0	2	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0013	3510	7	0	0	1	0	6	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0014	3514	6	6	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0015	3510	6	4	0	0	0	2	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0016	3516	6	0	0	5	0	1	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0017	3510	4	4	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0018	3510	3	0	0	3	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0019	3510	3	3	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0020	3514	2	1	0	0	1	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0021	3514	2	2	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0022	3510	2	2	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0023	3510	2	2	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0024	3510	2	1	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0025	3506	2	2	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0026	3510	1	0	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0027	3510	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0028	3510	1	0	0	0	0	1	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0029	3514	1	0	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0030	3514	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0031	3514	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0032	3514	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0033	3514	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0034	3510	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0035	3510	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0036	3510	1	0	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0037	3510	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0038	3510	1	0	0	0	0	1	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0039	3510	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0040	3510	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0041	3510	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0042	3510	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0043	3510	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0044	3516	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0045	3516	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160