JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD14_chr17_50105040_50135160	0/0	t0046	3516	1	0	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0047	3506	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0048	3506	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0049	3506	1	0	1	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0050	3516	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	t0051	3510	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD15_chr14_77372379_77397163	1/1	t0001	960	139	9	33	82	3	10	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0002	961	62	26	12	6	4	14	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0003	956	49	11	19	2	5	12	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0004	960	34	27	1	5	1	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0005	959	11	9	1	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0006	960	7	6	1	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0007	959	6	0	1	3	0	2	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0008	961	3	0	1	0	1	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0009	955	1	0	1	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0010	960	1	0	0	0	0	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	t0011	960	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD3_chr6_130139315_130227951	1/1	t0001	531	302	66	48	138	10	38	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0002	531	31	12	9	4	0	6	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0003	531	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0004	531	1	0	0	0	0	1	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0005	531	1	0	1	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0006	531	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	t0007	531	1	0	0	0	0	1	copy fasta	SAMD3	chr6	130139315	130227951
SAMD4A_chr14_54562128_54798312	0/0	t0001	5002	40	7	6	26	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/1	t0002	5001	36	7	10	12	3	3	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	1/0	t0003	5001	29	6	10	7	1	4	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0004	5002	23	8	1	10	0	4	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0005	4989	7	1	1	1	0	4	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0006	5001	6	0	4	1	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0007	5004	5	2	0	2	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0008	5002	5	4	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0009	5001	5	5	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0010	5002	4	0	2	0	1	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0011	5003	4	0	0	4	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0012	4996	4	0	2	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0013	5006	4	3	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0014	5008	3	2	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0015	5005	3	0	0	2	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0016	4996	3	0	0	3	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0017	5000	2	0	0	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0018	5006	2	0	0	1	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0019	4997	2	0	2	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0020	4997	2	0	0	1	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0021	5003	2	2	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0022	5004	2	1	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0023	5001	2	0	0	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0024	5001	2	2	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0025	4997	2	1	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0026	5001	2	0	0	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312