JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SAMD4A_chr14_54562128_54798312	0/0	t0027	5000	2	2	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0028	5001	2	0	0	2	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0029	5006	2	1	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0030	5002	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0031	5001	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0032	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0033	5002	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0034	5004	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0035	5008	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0036	4999	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0037	5000	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0038	5002	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0039	5002	1	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0040	5002	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0041	5003	1	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0042	5003	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0043	5005	1	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0044	5006	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0045	5007	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0046	5009	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0047	5010	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0048	5009	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0049	5007	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0050	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0051	5007	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0052	5006	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0053	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0054	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0055	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0056	5001	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0057	5007	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0058	5007	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0059	5003	1	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0060	4996	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0061	4999	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0062	5000	1	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0063	5000	1	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0064	5001	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0065	5003	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0066	5009	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0067	5001	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0068	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0069	5001	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0070	4997	1	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0071	4999	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0072	5000	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0073	4998	1	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0074	5002	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0075	5004	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0076	5009	1	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312