JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD4A_chr14_54562128_54798312	0/0	t0077	5008	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0078	5001	1	0	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0079	5003	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0080	5001	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0081	5001	1	0	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0082	5004	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0083	4996	1	0	1	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	t0084	5002	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4B_chr19_39337421_39390700	0/1	t0001	2596	100	7	25	44	8	15	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0002	2596	80	43	6	27	2	2	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0003	2596	16	14	2	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0004	2596	5	0	0	4	0	1	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0005	2596	4	4	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0006	2596	3	3	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0007	2596	2	0	0	0	2	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0008	2596	2	2	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0009	2597	2	0	0	2	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0010	2596	2	0	2	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	1/0	t0011	2596	2	0	1	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0012	2597	2	2	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0013	2596	2	0	0	2	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0014	2599	1	1	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0015	2599	1	0	0	1	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0016	2596	1	0	0	0	0	1	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0017	2596	1	0	1	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0018	2596	1	1	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0019	2596	1	0	0	1	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0020	2596	1	0	0	1	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0021	2596	1	0	1	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0022	2596	1	0	0	0	0	1	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	t0023	2596	1	1	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD5_chr6_147503690_147575021	0/0	t0001	5806	44	6	9	21	4	4	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0002	5807	30	0	5	24	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/1	t0003	5806	29	1	3	22	1	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0004	5806	25	5	7	8	2	3	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0005	5805	24	2	14	3	0	5	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0006	5807	16	0	10	1	1	4	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0007	5807	13	1	2	9	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0008	5806	12	8	2	0	2	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0009	5806	11	0	0	11	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0010	5806	9	0	2	5	0	2	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0011	5806	8	8	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0012	5806	7	7	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0013	5805	4	0	1	2	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0014	5805	4	1	1	1	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0015	5806	4	2	2	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0016	5804	4	3	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0017	5807	3	0	0	0	0	3	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0018	5806	3	0	0	3	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0019	5806	3	0	0	3	0	0	copy fasta	SAMD5	chr6	147503690	147575021