JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD5_chr6_147503690_147575021	0/0	t0020	5804	3	3	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0021	5807	3	0	0	3	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0022	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0023	5805	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0024	5805	2	0	2	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0025	5806	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0026	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0027	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0028	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0029	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0030	5806	2	0	2	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0031	5806	2	0	0	2	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0032	5806	2	0	0	2	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0033	5807	2	0	0	2	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0034	5804	2	2	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0035	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0036	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0037	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0038	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0039	5807	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0040	5806	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0041	5807	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0042	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0043	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0044	5807	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0045	5808	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0046	5807	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0047	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0048	5806	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0049	5806	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0050	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0051	5806	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0052	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0053	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0054	5805	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0055	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0056	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0057	5805	1	0	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0058	5807	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0059	5944	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0060	5805	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0061	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0062	5806	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0063	5805	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0064	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0065	5806	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0066	5808	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0067	5804	1	0	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0068	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0069	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021