Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AAK1_chr2_69452997_69648739	0/0	t0004	18276	13	1	0	11	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0005	18277	12	0	0	12	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0006	18273	11	0	11	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0007	18272	10	1	2	7	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0008	18272	9	5	0	2	0	2	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0009	18271	6	1	1	4	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0010	18275	6	1	4	0	1	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0011	18276	6	0	0	6	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0012	18279	5	0	0	4	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0013	18272	5	0	1	4	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0014	18279	4	3	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0015	18274	3	1	0	1	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0016	18275	3	2	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0017	18276	3	3	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0018	18270	3	3	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0019	18275	3	0	1	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0020	18273	3	0	0	3	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0021	18272	3	2	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0022	18273	2	1	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0023	18274	2	0	1	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0024	18272	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0025	18276	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0026	18279	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0027	18271	2	1	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0028	18270	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0029	18272	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0030	18278	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0031	18270	2	0	1	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0032	18270	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0033	18277	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0034	18273	2	1	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0035	18273	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0036	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0037	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0038	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0039	18273	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0040	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0041	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0042	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0043	18283	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0044	18273	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0045	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0046	18279	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0047	18273	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0048	18276	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0049	18273	1	0	0	0	1	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0050	18276	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0051	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0052	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0053	18274	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739