JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD5_chr6_147503690_147575021	0/0	t0070	5807	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0071	5805	1	0	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0072	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0073	5805	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0074	5804	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	1/0	t0075	5805	1	0	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0076	5807	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0077	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0078	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0079	5808	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0080	5808	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0081	5806	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0082	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0083	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0084	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0085	5796	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0086	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0087	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0088	5806	1	0	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0089	5806	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0090	5806	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0091	5807	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0092	5806	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0093	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0094	5805	1	0	0	0	1	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0095	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0096	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0097	5805	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0098	5805	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0099	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0100	5804	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0101	5807	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0102	5808	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0103	5807	1	0	0	0	0	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0104	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0105	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0106	5959	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0107	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0108	5805	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0109	5805	1	0	0	1	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0110	5806	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0111	5808	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0112	5805	1	0	1	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	t0113	5804	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD7_chr3_169906572_169944175	1/1	t0001	1036	290	71	67	106	14	30	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0002	1036	33	0	1	30	0	2	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0003	1035	28	5	2	19	1	1	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0004	1036	26	11	3	0	1	11	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0005	1036	21	0	5	16	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0006	1036	5	5	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175