JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD7_chr3_169906572_169944175	0/0	t0007	1036	4	4	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0008	1036	3	0	0	3	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0009	1036	2	0	0	2	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0010	1036	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0011	1036	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0012	1036	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	t0013	1036	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD8_chr10_75106656_75187123	0/0	t0001	5513	98	21	9	55	4	9	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/1	t0002	5514	75	2	15	50	2	5	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	1/0	t0003	5514	75	28	19	11	4	12	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0004	5514	14	7	2	3	2	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0005	5514	11	10	1	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0006	5514	8	7	1	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0007	5514	6	0	0	5	1	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0008	5513	3	0	0	3	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0009	5513	3	0	2	0	1	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0010	5514	3	0	0	3	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0011	5514	3	3	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0012	5514	3	0	3	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0013	5514	2	2	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0014	5514	2	2	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0015	5515	2	0	0	1	0	1	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0016	5514	2	2	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0017	5513	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0018	5514	1	0	1	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0019	5514	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0020	5514	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0021	5514	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0022	5514	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0023	5514	1	0	1	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0024	5513	1	0	0	0	0	1	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0025	5513	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0026	5514	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0027	5514	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0028	5514	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0029	5514	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	t0030	5514	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD9L_chr7_93125056_93153385	0/1	t0001	2396	94	2	17	52	7	15	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0002	2396	76	28	10	34	0	4	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0003	2394	43	9	2	31	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0004	2395	23	0	0	22	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0005	2388	20	3	7	3	1	6	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0006	2398	19	2	6	9	1	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0007	2398	10	0	2	4	0	4	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0008	2388	8	4	0	3	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0009	2390	6	4	2	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0010	2396	6	1	1	4	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0011	2388	6	5	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0012	2392	5	0	2	3	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0013	2400	4	0	3	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385