JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD9L_chr7_93125056_93153385	0/0	t0014	2394	4	1	3	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0015	2390	4	3	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0016	2400	4	2	1	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0017	2394	4	0	1	1	0	2	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0018	2394	4	4	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0019	2388	3	3	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0020	2394	3	2	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0021	2394	3	0	0	0	0	3	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	1/0	t0022	2396	3	0	1	0	1	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0023	2392	3	3	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0024	2386	3	3	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0025	2388	3	3	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0026	2396	2	2	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0027	2398	2	0	0	0	0	2	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0028	2392	2	0	0	2	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0029	2394	2	2	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0030	2392	2	0	1	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0031	2390	2	1	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0032	2394	2	0	0	2	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0033	2392	2	2	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0034	2397	2	0	0	0	0	2	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0035	2397	2	0	0	2	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0036	2394	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0037	2390	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0038	2390	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0039	2388	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0040	2394	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0041	2396	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0042	2398	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0043	2396	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0044	2394	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0045	2380	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0046	2398	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0047	2394	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0048	2398	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0049	2396	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0050	2396	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0051	2394	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0052	2388	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0053	2395	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0054	2381	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0055	2399	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	t0056	2397	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9_chr7_93094518_93122979	1/1	t0001	2037	265	57	41	126	8	31	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0002	2036	54	3	12	38	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0003	2037	26	23	3	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0004	2037	24	0	0	23	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0005	2036	7	4	0	3	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0006	2037	3	3	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0007	2037	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979