JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMD9_chr7_93094518_93122979	0/0	t0008	2037	2	2	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0009	2037	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0010	2037	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0011	2037	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0012	2037	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0013	2037	1	0	0	0	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0014	2037	1	0	0	0	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0015	2037	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0016	2037	1	0	0	0	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	t0017	2016	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMHD1_chr20_36885229_36956708	0/0	t0001	2781	45	3	10	23	2	7	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0002	2777	33	14	6	13	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0003	2797	24	1	1	17	2	3	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0004	2801	16	0	2	9	2	3	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0005	2785	14	3	2	9	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0006	2805	14	1	1	11	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0007	2809	13	0	2	10	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0008	2777	13	9	3	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0009	2813	11	0	1	10	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0010	2793	9	0	2	6	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/1	t0011	2785	9	0	5	2	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0012	2789	7	3	0	4	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0013	2781	6	0	3	0	2	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0014	2789	6	1	4	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0015	2793	5	2	0	2	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	1/0	t0016	2769	5	2	1	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0017	2793	5	2	1	0	2	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0018	2789	5	0	1	3	1	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0019	2797	5	5	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0020	2789	5	5	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0021	2809	4	2	1	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0022	2798	4	0	0	0	0	4	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0023	2805	3	0	1	0	0	2	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0024	2801	3	1	1	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0025	2793	3	0	3	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0026	2801	3	3	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0027	2797	3	1	1	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0028	2777	3	0	0	0	1	2	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0029	2817	3	0	2	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0030	2805	3	3	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0031	2769	3	3	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0032	2789	2	1	0	0	1	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0033	2759	2	2	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0034	2765	2	2	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0035	2805	2	1	0	0	1	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0036	2805	2	0	0	0	0	2	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0037	2821	2	0	0	2	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0038	2777	2	2	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0039	2813	2	2	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0040	2801	2	2	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708