JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMHD1_chr20_36885229_36956708	0/0	t0041	2785	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0042	2801	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0043	2797	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0044	2769	1	0	0	0	1	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0045	2781	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0046	2781	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0047	2781	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0048	2813	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0049	2808	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0050	2796	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0051	2785	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0052	2784	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0053	2801	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0054	2797	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0055	2785	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0056	2808	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0057	2806	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0058	2825	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0059	2781	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0060	2832	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0061	2793	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0062	2763	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0063	2781	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0064	2781	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0065	2781	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0066	2785	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0067	2807	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0068	2781	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0069	2769	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0070	2777	1	0	1	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0071	2765	1	0	0	0	1	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0072	2789	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0073	2802	1	0	0	1	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0074	2813	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0075	2809	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0076	2801	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	t0077	2797	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMM50_chr22_43950442_44001529	1/1	t0001	283	319	70	65	139	15	28	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0002	283	54	21	5	16	1	11	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0003	283	1	1	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0004	283	1	1	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0005	283	1	1	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0006	283	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	t0007	283	1	0	0	0	0	1	copy fasta	SAMM50	chr22	43950442	44001529
SAMSN1_chr21_14480228_14551315	1/1	t0001	739	336	79	59	146	17	33	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0002	739	44	8	6	26	0	4	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0003	739	9	0	0	9	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0004	739	4	3	1	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0005	739	3	0	2	0	1	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0006	739	2	0	0	2	0	0	copy fasta	SAMSN1	chr21	14480228	14551315