JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAMSN1_chr21_14480228_14551315	0/0	t0007	739	2	2	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0008	739	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0009	739	1	0	1	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0010	739	1	0	0	0	0	1	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0011	739	1	0	0	0	0	1	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0012	739	1	0	0	1	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0013	739	1	0	0	0	0	1	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0014	739	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	t0015	739	1	0	1	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SANBR_chr2_61060871_61129280	0/1	t0001	2422	125	39	24	47	7	7	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	1/0	t0002	2422	111	2	22	69	4	13	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0003	2422	43	13	18	4	4	4	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0004	2422	19	19	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0005	2422	11	1	7	0	1	2	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0006	2422	7	2	4	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0007	2422	5	3	0	2	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0008	2422	4	4	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0009	2422	3	0	2	0	0	1	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0010	2422	3	3	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0011	2422	3	0	0	3	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0012	2422	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0013	2422	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0014	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0015	2422	1	0	1	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0016	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0017	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0018	2422	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0019	2422	1	0	0	0	0	1	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0020	2422	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0021	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0022	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	t0023	2422	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SAP130_chr2_127936222_128033059	1/1	t0001	911	328	82	57	143	8	36	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0002	911	4	4	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0003	911	4	0	0	4	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0004	911	3	2	1	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0005	911	2	1	1	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0006	911	1	0	1	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0007	911	1	1	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0008	911	1	1	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0009	911	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0010	911	1	0	0	0	0	1	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0011	911	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0012	911	1	0	0	0	0	1	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0013	911	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	t0014	911	1	1	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP18_chr13_21135119_21154097	0/0	t0001	2190	202	10	44	119	9	20	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	1/0	t0002	2190	86	22	16	31	4	12	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/1	t0003	2190	63	17	10	22	5	8	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0004	2183	12	11	0	0	0	1	copy fasta	SAP18	chr13	21135119	21154097