JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAP18_chr13_21135119_21154097	0/0	t0005	2188	7	0	3	0	0	4	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0006	2190	7	7	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0007	2190	4	0	0	4	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0008	2190	4	3	1	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0009	2190	3	3	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0010	2185	3	3	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0011	2184	3	3	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0012	2190	3	3	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0013	2190	2	0	0	2	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0014	2190	2	0	0	2	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0015	2190	2	0	0	2	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0016	2186	2	2	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0017	2190	2	0	0	2	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0018	2190	2	0	2	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0019	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0020	2190	1	0	0	0	0	1	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0021	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0022	2190	1	0	1	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0023	2190	1	1	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0024	2190	1	1	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0025	2190	1	0	1	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0026	2190	1	0	0	0	0	1	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0027	2190	1	1	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0028	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0029	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0030	2190	1	0	1	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0031	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0032	2190	1	0	1	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0033	2190	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0034	2184	1	1	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	t0035	2190	1	0	0	0	0	1	copy fasta	SAP18	chr13	21135119	21154097
SAP25_chr7_100567228_100578900	1/1	t0001	218	383	91	62	162	17	49	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	t0002	218	3	1	0	0	1	1	copy fasta	SAP25	chr7	100567228	100578900
SAP30BP_chr17_75662338_75713059	1/1	t0001	1574	338	71	48	159	12	46	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0002	1574	8	0	8	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0003	1574	5	5	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0004	1574	3	3	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0005	1571	2	2	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0006	1571	2	2	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0007	1574	1	0	1	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0008	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0009	1574	1	0	1	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0010	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0011	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0012	1574	1	0	0	1	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0013	1574	1	0	1	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0014	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0015	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0016	1574	1	0	1	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	t0017	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059