JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAP30BP_chr17_75662338_75713059	0/0	t0018	1574	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30L_chr5_154440997_154466053	0/0	t0001	5634	131	9	30	68	3	21	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0002	5634	75	30	27	1	5	12	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/1	t0003	5634	57	10	8	35	3	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0004	5634	53	8	4	31	1	9	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0005	5634	38	2	1	34	1	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0006	5634	9	0	0	8	1	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	1/0	t0007	5634	7	1	1	0	2	2	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0008	5634	6	0	0	6	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0009	5634	5	5	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0010	5634	5	0	0	5	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0011	5633	5	4	1	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0012	5634	5	0	2	0	0	3	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0013	5634	4	0	0	4	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0014	5634	4	1	1	0	2	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0015	5634	4	2	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0016	5634	4	4	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0017	5634	3	3	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0018	5634	3	2	1	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0019	5634	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0020	5634	2	0	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0021	5634	2	0	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0022	5634	2	0	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0023	5634	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0024	5634	2	0	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0025	5634	2	0	0	2	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0026	5634	2	0	2	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0027	5634	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0028	5634	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0029	5634	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0030	5634	1	1	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0031	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0032	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0033	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0034	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0035	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0036	5634	1	0	0	0	0	1	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0037	5634	1	1	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0038	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0039	5634	1	0	1	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0040	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0041	5634	1	0	1	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0042	5634	1	1	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0043	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0044	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0045	5634	1	0	0	0	0	1	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0046	5634	1	1	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0047	5634	1	0	0	0	0	1	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0048	5634	1	1	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	t0049	5634	1	0	0	1	0	0	copy fasta	SAP30L	chr5	154440997	154466053