JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAP30_chr4_173365954_173382532	1/1	t0001	435	358	90	54	162	10	40	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	t0002	435	4	4	0	0	0	0	copy fasta	SAP30	chr4	173365954	173382532
SAPCD1_chr6_31757656_31769850	0/0	t0001	720	205	68	41	73	6	17	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/1	t0002	719	168	18	34	84	11	20	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	t0003	719	22	0	0	20	0	2	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	t0004	719	19	4	3	4	1	7	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	t0005	719	1	1	0	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	t0006	720	1	1	0	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	t0007	720	1	0	0	1	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD2_chr9_137057127_137075557	0/0	t0001	2588	137	41	12	65	6	13	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0002	2630	95	1	27	56	3	8	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0003	2630	56	3	24	1	9	19	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	1/0	t0004	2630	27	6	1	14	0	5	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0005	2592	21	0	1	19	0	1	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0006	2630	9	9	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0007	2588	8	8	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0008	2630	6	0	0	6	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0009	2630	6	6	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0010	2630	5	0	0	5	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0011	2630	5	1	4	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0012	2630	3	3	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0013	2588	3	3	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0014	2630	3	3	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0015	2592	3	0	3	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0016	2588	2	0	0	2	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0017	2588	2	1	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0018	2630	2	1	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0019	2630	2	2	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0020	2588	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0021	2589	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0022	2630	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0023	2630	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0024	2588	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0025	2588	1	0	0	0	0	1	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0026	2588	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/1	t0027	2588	1	0	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0028	2588	1	0	0	0	0	1	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0029	2592	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0030	2588	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0031	2630	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0032	2588	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0033	2630	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0034	2588	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0035	2588	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0036	2619	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0037	2630	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	t0038	2630	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAR1A_chr10_70142289_70175514	0/0	t0001	5307	31	0	8	23	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0002	5331	30	1	3	23	1	2	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0003	5305	27	4	10	0	6	7	copy fasta	SAR1A	chr10	70142289	70175514