JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAR1A_chr10_70142289_70175514	0/0	t0004	5332	14	0	2	12	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0005	5332	12	1	1	6	1	3	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0006	5316	10	0	0	9	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0007	5333	9	1	0	7	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0008	5306	8	2	2	0	1	3	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0009	5307	8	7	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0010	5308	8	0	1	6	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0011	5306	7	6	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0012	5330	7	0	1	4	2	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0013	5315	6	1	0	5	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0014	5307	6	1	2	1	0	2	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0015	5320	6	0	1	5	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0016	5317	5	0	1	4	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0017	5333	5	0	0	3	0	2	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0018	5320	4	1	3	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0019	5300	4	4	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0020	5308	4	0	2	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0021	5306	4	0	0	4	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0022	5319	4	4	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0023	5320	4	0	1	3	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0024	5321	4	0	0	4	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0025	5321	4	0	1	3	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0026	5331	4	0	0	3	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0027	5305	3	2	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0028	5333	3	2	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0029	5320	3	0	0	3	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0030	5308	3	1	0	0	1	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0031	5307	3	0	0	3	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0032	5322	3	3	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0033	5331	3	0	0	2	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0034	5333	3	0	1	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0035	5331	3	3	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0036	5334	3	0	3	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0037	5330	3	0	0	3	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0038	5332	3	0	3	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0039	5333	3	0	2	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0040	5317	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0041	5309	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0042	5306	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0043	5306	2	1	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0044	5306	2	1	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0045	5321	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0046	5308	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0047	5321	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0048	5309	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0049	5308	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0050	5324	2	1	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0051	5321	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0052	5312	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0053	5310	2	0	0	2	0	0	copy fasta	SAR1A	chr10	70142289	70175514