Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BACH2_chr6_89921528_90301843	0/0	t0132	6677	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0133	6689	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0134	6677	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0135	6687	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0136	6688	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	t0137	6688	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BAD_chr11_64264830_64289665	1/1	t0001	423	328	64	71	140	15	36	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0002	423	35	28	2	0	0	5	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0003	423	14	0	0	14	0	0	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0004	423	6	1	0	5	0	0	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0005	423	1	0	1	0	0	0	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0006	423	1	1	0	0	0	0	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0007	423	1	0	0	0	0	1	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0008	423	1	0	0	0	1	0	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	t0009	423	1	0	0	1	0	0	copy fasta	BAD	chr11	64264830	64289665
BAG1_chr9_33247471_33269708	1/1	t0001	2783	128	9	30	67	3	17	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0002	2789	66	12	15	31	1	7	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0003	2784	33	1	4	23	0	5	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0004	2786	30	13	1	15	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0005	2787	16	16	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0006	2789	6	5	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0007	2788	5	4	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0008	2787	4	4	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0009	2788	3	2	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0010	2790	3	0	1	2	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0011	2788	3	0	0	3	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0012	2788	3	1	0	2	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0013	2782	3	1	1	0	1	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0014	2785	2	2	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0015	2785	2	1	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0016	2786	2	1	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0017	2784	2	1	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0018	2783	2	0	0	2	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0019	2783	2	0	1	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0020	2786	2	2	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0021	2785	2	1	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0022	2785	2	2	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0023	2783	2	0	0	2	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0024	2789	2	2	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0025	2785	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0026	2783	1	0	0	0	1	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0027	2788	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0028	2786	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0029	2786	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0030	2787	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0031	2787	1	0	0	0	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0032	2787	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0033	2784	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0034	2786	1	0	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0035	2787	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708