JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAR1A_chr10_70142289_70175514	0/0	t0054	5324	2	0	2	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0055	5315	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0056	5310	2	0	0	1	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0057	5335	2	0	2	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0058	5335	2	2	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0059	5317	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0060	5317	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0061	5318	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0062	5318	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0063	5317	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0064	5306	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0065	5300	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0066	5307	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0067	5316	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0068	5333	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0069	5306	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0070	5332	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0071	5334	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0072	5326	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0073	5324	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0074	5327	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0075	5330	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0076	5307	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0077	5299	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0078	5307	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0079	5300	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0080	5305	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0081	5305	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0082	5300	1	0	0	0	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0083	5305	1	0	0	0	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0084	5305	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0085	5305	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0086	5308	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0087	5316	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0088	5315	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0089	5313	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0090	5307	1	0	0	0	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0091	5320	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0092	5315	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0093	5344	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0094	5339	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0095	5334	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0096	5332	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0097	5328	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0098	5325	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0099	5321	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0100	5310	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0101	5323	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0102	5321	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0103	5319	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514