JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAR1A_chr10_70142289_70175514	0/0	t0104	5308	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0105	5311	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0106	5303	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	1/0	t0107	5306	1	0	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0108	5342	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0109	5336	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0110	5318	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0111	5322	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0112	5317	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0113	5320	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0114	5307	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0115	5308	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0116	5307	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0117	5307	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0118	5309	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0119	5309	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0120	5303	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0121	5309	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0122	5307	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0123	5322	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0124	5322	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0125	5309	1	0	0	0	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0126	5304	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0127	5334	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0128	5320	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0129	5325	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0130	5316	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0131	5315	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0132	5309	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0133	5335	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0134	5329	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0135	5331	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0136	5331	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0137	5342	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0138	5334	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0139	5320	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0140	5334	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0141	5335	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0142	5336	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0143	5335	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0144	5321	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0145	5335	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0146	5333	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0147	5322	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0148	5336	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/1	t0149	5336	1	0	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0150	5307	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0151	5307	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0152	5318	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0153	5317	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514