JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAR1A_chr10_70142289_70175514	0/0	t0154	5320	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0155	5324	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0156	5322	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0157	5319	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0158	5322	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0159	5321	1	0	0	0	1	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0160	5325	1	0	0	0	0	1	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0161	5323	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0162	5333	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0163	5331	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0164	5332	1	0	1	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0165	5305	1	1	0	0	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1A_chr10_70142289_70175514	0/0	t0166	5330	1	0	0	1	0	0	copy fasta	SAR1A	chr10	70142289	70175514
SAR1B_chr5_134596149_134637828	1/1	t0001	5921	154	49	25	57	4	17	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0002	5922	54	19	12	17	1	5	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0003	5921	43	3	6	30	2	2	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0004	5921	20	7	2	11	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0005	5922	8	0	0	8	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0006	5921	5	5	0	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0007	5922	5	1	1	3	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0008	5921	4	0	3	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0009	5921	3	0	0	3	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0010	5921	3	3	0	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0011	5922	3	0	1	0	0	2	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0012	5921	2	0	1	0	0	1	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0013	5921	2	2	0	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0014	5921	2	1	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0015	5921	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0016	5920	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0017	5921	1	0	0	0	1	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0018	5921	1	0	0	0	0	1	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0019	5921	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0020	5921	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0021	5921	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0022	5906	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0023	5921	1	1	0	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0024	5921	1	1	0	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0025	5922	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0026	5921	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0027	5922	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	t0028	5922	1	0	1	0	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SARAF_chr8_30058003_30088064	0/1	t0001	1001	210	54	37	87	6	25	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	1/0	t0002	1001	65	24	5	28	3	4	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0003	1001	62	5	9	41	3	4	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0004	1001	8	1	2	0	0	5	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0005	1001	4	4	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0006	1001	2	0	2	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0007	1001	2	0	0	0	2	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0008	1001	1	0	1	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0009	1001	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064