JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SARAF_chr8_30058003_30088064	0/0	t0010	1001	1	0	0	1	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0011	1001	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0012	1001	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0013	1001	1	0	0	1	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	t0014	1001	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARDH_chr9_133658560_133743352	0/1	t0001	459	104	18	27	36	12	10	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	1/0	t0002	459	79	30	9	25	2	12	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0003	459	42	9	12	10	2	9	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0004	459	32	17	3	9	0	3	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0005	459	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0006	459	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0007	459	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0008	459	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	t0009	459	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARM1_chr17_28366694_28409049	0/0	t0001	8104	123	25	25	55	4	14	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0002	8103	53	5	5	38	1	4	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0003	8104	22	1	10	0	4	7	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/1	t0004	8104	17	2	3	1	1	9	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0005	8104	13	12	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0006	8104	10	10	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0007	8104	8	1	7	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0008	8104	8	0	0	8	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0009	8104	7	7	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0010	8104	6	5	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0011	8103	6	0	0	6	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0012	8104	4	0	1	3	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0013	8104	4	0	0	4	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0014	8104	4	2	2	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0015	8103	3	2	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0016	8104	3	3	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0017	8104	3	3	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0018	8104	3	2	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0019	8104	2	2	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0020	8104	2	0	2	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0021	8104	2	0	0	2	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0022	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0023	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0024	8104	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0025	8104	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0026	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0027	8104	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0028	8104	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0029	8104	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0030	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0031	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	1/0	t0032	8103	1	0	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0033	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0034	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0035	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0036	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049