JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SARM1_chr17_28366694_28409049	0/0	t0037	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0038	8104	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0039	8104	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0040	8103	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0041	8104	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0042	8104	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0043	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0044	8065	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0045	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0046	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0047	8104	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0048	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0049	8104	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0050	8103	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0051	8103	1	0	0	0	0	1	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0052	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0053	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	t0054	8104	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARNP_chr12_55752270_55822724	1/1	t0001	266	231	87	36	77	4	25	copy fasta	SARNP	chr12	55752270	55822724
SARNP_chr12_55752270_55822724	0/0	t0002	266	40	2	15	18	2	3	copy fasta	SARNP	chr12	55752270	55822724
SARNP_chr12_55752270_55822724	0/0	t0003	266	4	3	1	0	0	0	copy fasta	SARNP	chr12	55752270	55822724
SARNP_chr12_55752270_55822724	0/0	t0004	266	1	0	0	1	0	0	copy fasta	SARNP	chr12	55752270	55822724
SARS1_chr1_109208918_109243182	1/1	t0001	370	398	96	71	166	18	45	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	t0002	370	2	0	1	0	0	1	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	t0003	370	1	0	0	1	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	t0004	370	1	0	0	1	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS2_chr19_38910266_38935763	0/0	t0001	368	252	61	43	123	6	19	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/1	t0002	368	113	26	19	53	3	11	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	1/0	t0003	368	39	4	12	4	6	12	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0004	368	6	6	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0005	360	3	0	0	0	0	3	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0006	368	2	0	0	0	0	2	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0007	368	2	0	1	0	1	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0008	368	1	0	0	0	0	1	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0009	368	1	0	1	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	t0010	368	1	1	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SART1_chr11_65956734_65985137	0/0	t0001	1155	174	23	40	88	5	18	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0002	1155	116	44	12	45	3	12	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/1	t0003	1155	64	8	13	28	4	10	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0004	1154	8	7	1	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	1/0	t0005	1155	5	4	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0006	1155	3	3	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0007	1155	2	2	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0008	1155	2	1	1	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0009	1155	1	0	0	0	0	1	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0010	1154	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0011	1155	1	0	1	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0012	1155	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0013	1155	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0014	1155	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137