JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SART1_chr11_65956734_65985137	0/0	t0015	1155	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0016	1155	1	0	0	0	0	1	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0017	1155	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	t0018	1155	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART3_chr12_108517214_108566173	0/1	t0001	1263	295	40	51	161	9	33	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	1/0	t0002	1263	81	46	6	18	3	7	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0003	1263	6	0	0	6	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0004	1263	5	5	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0005	1263	3	3	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0006	1263	2	2	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0007	1263	1	0	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	t0008	1263	1	0	0	1	0	0	copy fasta	SART3	chr12	108517214	108566173
SASH1_chr6_148337838_148557044	0/0	t0001	3717	74	6	12	44	4	8	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/1	t0002	3717	62	4	18	24	2	13	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	1/0	t0003	3717	35	1	6	24	2	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0004	3717	30	7	5	11	0	7	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0005	3718	26	22	1	1	0	2	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0006	3716	16	1	6	5	0	4	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0007	3717	12	11	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0008	3717	7	6	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0009	3716	7	0	5	0	2	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0010	3717	7	0	1	4	1	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0011	3717	6	6	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0012	3716	6	6	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0013	3718	4	0	2	0	2	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0014	3717	4	4	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0015	3717	3	3	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0016	3716	2	2	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0017	3716	2	2	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0018	3717	2	2	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0019	3717	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0020	3717	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0021	3717	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0022	3717	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0023	3717	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0024	3716	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0025	3716	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0026	3718	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0027	3718	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0028	3758	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0029	3717	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0030	3717	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0031	3717	1	0	0	0	1	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0032	3717	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0033	3717	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0034	3716	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	t0035	3716	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH3_chrX_129774949_129800201	0/0	t0001	1519	163	26	20	90	5	22	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0002	1519	44	9	1	30	0	4	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	1/0	t0003	1519	31	1	19	0	6	4	copy fasta	SASH3	chrX	129774949	129800201