JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SASH3_chrX_129774949_129800201	0/0	t0004	1519	26	10	1	15	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0005	1519	11	11	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0006	1519	9	9	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0007	1519	5	4	1	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0008	1519	4	4	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/1	t0009	1519	2	0	1	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0010	1519	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0011	1520	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0012	1520	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0013	1519	1	0	0	0	0	1	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0014	1520	1	0	0	0	0	1	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0015	1519	1	0	1	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0016	1519	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0017	1519	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0018	1519	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0019	1519	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0020	1519	1	0	1	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	t0021	1519	1	0	1	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASS6_chr1_100078570_100137930	1/1	t0001	1875	234	51	46	99	9	27	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0002	1876	20	5	3	7	0	5	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0003	1879	11	3	0	8	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0004	1875	10	9	1	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0005	1850	5	4	1	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0006	1873	4	4	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0007	1872	4	4	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0008	1876	3	3	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0009	1875	3	0	1	0	1	1	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0010	1875	2	0	2	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0011	1875	2	0	0	2	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0012	1875	2	2	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0013	1875	2	0	0	2	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0014	1875	1	0	0	0	0	1	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	t0015	1876	1	1	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SAT1_chrX_23778173_23791210	1/1	t0001	534	293	72	49	132	11	27	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0002	534	16	0	12	0	2	2	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0003	534	6	6	0	0	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0004	534	6	0	0	6	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0005	531	3	0	0	3	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0006	534	2	0	0	2	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0007	534	1	0	0	1	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0008	534	1	0	0	1	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0009	534	1	0	0	1	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	t0010	534	1	0	0	0	0	1	copy fasta	SAT1	chrX	23778173	23791210
SAT2_chr17_7621234_7632821	1/1	t0001	400	414	73	80	199	14	46	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	t0002	400	17	17	0	0	0	0	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	t0003	400	1	0	0	1	0	0	copy fasta	SAT2	chr17	7621234	7632821
SATB1_chr3_18340377_18430339	0/0	t0001	5527	34	0	10	19	1	4	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0002	5527	19	0	0	17	0	2	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0003	5527	16	3	4	5	1	3	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0004	5530	15	5	1	6	0	3	copy fasta	SATB1	chr3	18340377	18430339