JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SATB1_chr3_18340377_18430339	0/0	t0055	5531	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0056	5527	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0057	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0058	5530	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0059	5528	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0060	5534	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0061	5531	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0062	5530	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0063	5531	1	0	0	0	1	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0064	5527	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0065	5530	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0066	5533	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0067	5530	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0068	5529	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0069	5532	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0070	5529	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0071	5532	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0072	5531	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0073	5522	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0074	5530	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0075	5530	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0076	5528	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0077	5528	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0078	5533	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0079	5526	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0080	5527	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0081	5524	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0082	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0083	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0084	5534	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0085	5516	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0086	5529	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0087	5527	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0088	5535	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0089	5528	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0090	5532	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0091	5528	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0092	5531	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0093	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0094	5530	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0095	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0096	5531	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0097	5533	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0098	5524	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	1/0	t0099	5531	1	0	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0100	5528	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0101	5530	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0102	5531	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0103	5535	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0104	5531	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339