JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SATB1_chr3_18340377_18430339	0/0	t0105	5533	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0106	5526	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0107	5532	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0108	5532	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0109	5522	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0110	5525	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0111	5537	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0112	5530	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0113	5525	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0114	5526	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0115	5530	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0116	5530	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0117	5530	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0118	5528	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0119	5526	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0120	5524	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0121	5516	1	0	0	0	0	1	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0122	5523	1	1	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	t0123	5527	1	0	0	1	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB2_chr2_199264505_199462939	0/0	t0001	3370	76	16	15	36	1	8	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/1	t0002	3369	73	7	25	25	3	12	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0003	3368	31	6	4	9	3	9	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0004	3368	12	10	0	1	0	1	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0005	3367	8	8	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0006	3368	6	6	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0007	3369	5	3	0	2	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	1/0	t0008	3367	4	3	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0009	3370	4	0	0	4	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0010	3368	3	0	0	3	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0011	3369	2	2	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0012	3370	2	2	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0013	3370	2	2	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0014	3368	2	1	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0015	3370	2	0	0	2	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0016	3368	2	0	2	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0017	3370	2	2	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0018	3369	2	2	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0019	3371	2	1	0	0	0	1	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0020	3370	2	0	1	0	1	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0021	3369	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0022	3368	1	1	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0023	3369	1	1	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0024	3369	1	1	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0025	3370	1	0	1	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0026	3368	1	0	1	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0027	3370	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0028	3368	1	0	0	0	0	1	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0029	3368	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0030	3368	1	0	1	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	t0031	3370	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939