Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAG1_chr9_33247471_33269708	0/0	t0036	2789	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0037	2791	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0038	2789	1	0	1	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0039	2790	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0040	2787	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0041	2788	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0042	2785	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0043	2786	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0044	2783	1	0	0	0	0	1	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0045	2789	1	1	0	0	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0046	2783	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	t0047	2782	1	0	0	1	0	0	copy fasta	BAG1	chr9	33247471	33269708
BAG2_chr6_57167326_57194833	1/1	t0001	6016	121	30	29	41	4	15	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0002	6014	33	7	9	11	2	4	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0003	6016	25	4	6	10	2	3	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0004	6014	8	8	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0005	6016	6	5	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0006	6020	6	6	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0007	6014	4	0	0	4	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0008	6016	4	4	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0009	6016	3	3	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0010	6018	2	2	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0011	6016	2	2	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0012	6016	2	0	2	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0013	6016	2	0	1	0	1	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0014	6016	2	2	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0015	6016	1	0	0	0	0	1	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0016	6016	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0017	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0018	6020	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0019	6018	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0020	6016	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0021	6016	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0022	6016	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0023	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0024	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0025	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0026	5933	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0027	6016	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0028	6016	1	0	0	0	0	1	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0029	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0030	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0031	6014	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0032	6016	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0033	6014	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0034	6016	1	0	1	0	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0035	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0036	6016	1	0	0	0	1	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0037	6016	1	0	0	1	0	0	copy fasta	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	t0038	6016	1	1	0	0	0	0	copy fasta	BAG2	chr6	57167326	57194833