JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SATB2_chr2_199264505_199462939	0/0	t0032	3370	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATL1_chrX_85087284_85248779	1/0	t0001	734	177	51	26	79	3	17	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/1	t0002	732	38	13	5	14	2	3	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	t0003	734	16	5	1	8	0	2	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	t0004	732	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SAV1_chr14_50628580_50673306	0/0	t0001	1937	192	38	31	99	5	19	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0002	1943	76	3	17	43	2	11	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/1	t0003	1937	45	21	20	0	1	2	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0004	1931	28	5	3	13	2	5	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0005	1943	14	14	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0006	1936	6	4	2	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0007	1938	4	2	2	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0008	1931	4	0	1	0	3	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0009	1937	3	0	0	0	0	3	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0010	1931	3	3	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0011	1937	3	3	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0012	1937	2	2	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0013	1949	2	2	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0014	1937	1	1	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0015	1937	1	0	1	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0016	1937	1	1	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0017	1937	1	0	0	1	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0018	1937	1	0	0	0	1	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	1/0	t0019	1943	1	0	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0020	1942	1	0	1	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	t0021	1949	1	1	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAXO1_chr9_18922650_19038209	0/0	t0001	704	68	6	13	40	1	8	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	1/0	t0002	704	41	2	5	29	3	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0003	704	36	17	4	10	0	5	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0004	704	31	1	4	20	0	6	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0005	704	26	8	2	11	1	4	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0006	704	19	6	9	1	2	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0007	704	19	4	2	10	0	3	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/1	t0008	704	18	6	3	4	1	3	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0009	702	18	0	2	13	0	3	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0010	702	18	0	5	13	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0011	704	10	9	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0012	704	9	4	0	0	2	3	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0013	704	7	7	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0014	704	6	6	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0015	702	5	0	0	4	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0016	704	5	0	0	5	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0017	704	3	1	0	0	2	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0018	704	3	0	1	0	2	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0019	704	2	0	2	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0020	704	2	2	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0021	702	2	0	0	0	0	2	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0022	704	2	0	2	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0023	702	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0024	704	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209