JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAXO1_chr9_18922650_19038209	0/0	t0025	704	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0026	704	1	0	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0027	704	1	0	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0028	704	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0029	704	1	0	0	0	1	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0030	704	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0031	704	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0032	704	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0033	704	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0034	704	1	0	0	0	1	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0035	702	1	0	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	t0036	704	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO2_chr15_82257818_82289927	1/0	t0001	1928	236	55	39	119	4	18	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0002	1928	106	21	11	47	7	20	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0003	1928	19	0	0	19	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/1	t0004	1924	19	4	9	0	4	1	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0005	1928	6	1	3	2	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0006	1928	4	3	1	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0007	1928	3	0	0	3	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0008	1927	3	0	0	2	1	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0009	1928	2	0	0	2	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0010	1928	2	0	0	2	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0011	1928	1	1	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0012	1928	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0013	1928	1	0	1	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0014	1928	1	1	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0015	1923	1	0	0	0	0	1	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	t0016	1928	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAYSD1_chr6_39099063_39120186	1/0	t0001	1467	183	10	34	100	12	26	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0002	1467	80	1	16	54	3	6	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0003	1467	64	31	6	23	1	3	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0004	1467	37	6	7	20	0	4	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0005	1467	22	16	2	3	0	1	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0006	1467	20	10	5	1	1	3	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0007	1467	19	5	1	7	1	5	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/1	t0008	1467	12	8	3	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0009	1467	4	3	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0010	1467	4	4	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0011	465	2	1	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0012	1467	2	2	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0013	1467	2	0	0	2	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0014	1467	2	0	0	2	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0015	1467	1	0	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0016	1467	1	0	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0017	464	1	1	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0018	1467	1	1	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0019	1467	1	0	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0020	1467	1	0	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	t0021	1467	1	1	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SBDS_chr7_66982680_67000586	1/1	t0001	861	424	88	79	191	16	48	copy fasta	SBDS	chr7	66982680	67000586