JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBF1_chr22_50440000_50480035	0/0	t0046	2335	2	0	0	2	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0047	2342	2	1	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0048	2343	2	0	0	1	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0049	2334	2	0	0	2	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0050	2336	2	0	1	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0051	2337	2	0	0	1	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0052	2334	2	0	0	1	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0053	2336	2	2	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0054	2324	2	0	0	2	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0055	2336	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0056	2340	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0057	2336	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0058	2337	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0059	2345	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0060	2338	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0061	2339	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0062	2337	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0063	2324	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0064	2338	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0065	2338	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0066	2338	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0067	2338	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0068	2339	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0069	2339	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0070	2340	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0071	2337	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0072	2338	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0073	2338	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0074	2340	1	0	0	0	1	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0075	2333	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0076	2333	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0077	2333	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0078	2334	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0079	2334	1	0	0	0	1	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0080	2343	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0081	2345	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0082	2344	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0083	2334	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0084	2335	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0085	2337	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0086	2335	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0087	2330	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0088	2344	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0089	2334	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0090	2335	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0091	2335	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0092	2330	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0093	2340	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0094	2340	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0095	2341	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035